Summary

Binding affinity of MHC class I molecules

DOI (more info at datacite)

10.5881/MHC-AFFINITY

License

CC0

Dependencies

Tags

bioinformatics mhc

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Original Data Format

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Name

Version mldata

Comment

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Data (first 10 data points)

Format not HDF5, zip or tar archive. Will parse the following text:

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Description

MHC class 1 molecule binding affinity.

Obtained via Christian Widmer.

C. Widmer, N. Toussaint, Y. Altun, and G. Ratsch. Inferring latent task structure for multitask learning ¨ by multiple kernel learning. BMC Bioinformatics, 11(Suppl 8:S5), 2010.

Superset of the data mhc-nips11

URLs

http://tools.iedb.org/main/html/datasets.html

Publications

Data Source

B. Peters et. al. A community resource benchmarking predictions of peptide binding to mhc-i molecules. PLoS Computational Biology, 2(6):e65, 2006.

Measurement Details

• Features are the 45 PCA values of encoded peptides (divided by the vector norm). PCA done in Widmer et. al.
• Labels are -log10(ic50s)+log10(500)
• First column contains the label, second column the context, the rest the features

Usage Scenario

revision 1

by cong on 2014-12-06 07:33

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